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| In meso structure of alginate transporter, AlgE, from Pseudomoas aeruginosa, PAO1, crystal form 2. |
| This entry was created with PDB-REDO version 8.04 using the deposited PDB model version 1.6 |
| From original header | |||||
|---|---|---|---|---|---|
| Spacegroup | P 1 21 1 | a: 47.090Å b: 245.760Å c: 47.130Å | α: 90.00° β: 104.36° γ: 90.00° | ||
| Resolution | 2.80 Å | Reflections | 23751 | Test set | 0 (0.0%) |
| R | 0.2371 | R-free | 0.2803 | ||
| According to PDB-REDO | |||||
| Resolution | 2.80 Å | Reflections | 23751 | Test set |
1218 (5.1%)
New test set, PDB-REDO compensated for this
|
| Twin | false | Radiation damage | N/A | ||
| PDB-REDO files | |||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||
| Links | |||||
| PDBe | RCSB PDB | Proteopedia | |||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2417 | 0.2210 |
| R-free |
0.2930
R-free was considered biased, the
estimated unbiased R-free was used
|
0.2635 |
| Bond length RMS Z-score | 0.832 | 0.219 |
| Bond angle RMS Z-score | 0.786 | 0.451 |
| Model quality | ||
| Ramachandran plot normality | 0.046 83 | -0.363 73 |
| Rotamer normality | -0.909 74 | -1.704 57 |
| Coarse packing | N/A N/A | N/A N/A |
| Fine packing | N/A N/A | N/A N/A |
| Bump severity | 0.000 95 | 0.000 95 |
| Hydrogen bond satisfaction | N/A N/A | N/A N/A |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 14 |
| Side chains built | 0 |
| Waters removed | 1 |
| Peptides flipped | 1 |
| Chiralities fixed | 0 |
| Residues fitting density better | 1 |
| Residues fitting density worse | 0 |