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Crystal Structure of Fucose binding lectin from Aspergillus Fumigatus (AFL) in complex with BGA Oligosaccharide. |
This entry was created with PDB-REDO version 8.04. |
From original header | |||||||
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Spacegroup | P 1 | a: 46.420 Å | b: 47.440 Å | c: 80.086 Å | α: 103.61° | β: 91.96° | γ: 113.08° |
Resolution | 1.75 Å | Reflections | 57392 | Test set | 2897 (5.0%) | ||
R | 0.1676 | R-free | 0.2107 | ||||
According to PDB-REDO | |||||||
Resolution | 1.75 Å | Reflections | 57392 | Test set | 2897 (5.0%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1651 | 0.1620 |
R-free | 0.2069 | 0.1919 |
Bond length RMS Z-score | 1.494 | 0.397 |
Bond angle RMS Z-score | 1.060 | 0.686 |
Model quality | ||
Ramachandran plot normality | -0.448 71 | -0.424 72 |
Rotamer normality | -1.532 61 | -0.930 73 |
Coarse packing | N/A N/A | N/A N/A |
Fine packing | N/A N/A | N/A N/A |
Bump severity | 0.002 85 | 0.055 16 |
Hydrogen bond satisfaction | N/A N/A | N/A N/A |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 19 |
Side chains flipped | 0 |
Waters removed | 2 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 0 |
Residues fitting density worse | 1 |