This entry is not up to date with the most recent version of PDB-REDO.
Please log in
to request an update.
| In meso structure of alginate transporter, AlgE, from Pseudomonas aeruginosa, PAO1 |
| This entry was created with PDB-REDO version 8.04 using the deposited PDB model version 1.7 |
| From original header | |||||
|---|---|---|---|---|---|
| Spacegroup | C 1 2 1 | a: 57.253Å b: 74.416Å c: 115.529Å | α: 90.00° β: 101.56° γ: 90.00° | ||
| Resolution | 1.90 Å | Reflections | 36787 | Test set | 1845 (5.0%) |
| R | 0.1633 | R-free | 0.2086 | ||
| According to PDB-REDO | |||||
| Resolution | 1.90 Å | Reflections | 36787 | Test set | 1845 (5.0%) |
| Twin | false | Radiation damage | N/A | ||
| PDB-REDO files | |||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||
| Links | |||||
| PDBe | RCSB PDB | Proteopedia | |||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.1660 | 0.1686 |
| R-free | 0.2010 | 0.1985 |
| Bond length RMS Z-score | 0.968 | 0.325 |
| Bond angle RMS Z-score | 0.909 | 0.580 |
| Model quality | ||
| Ramachandran plot normality | -0.004 82 | 0.050 83 |
| Rotamer normality | -0.479 82 | -0.175 87 |
| Coarse packing | N/A N/A | N/A N/A |
| Fine packing | N/A N/A | N/A N/A |
| Bump severity | 0.000 95 | 0.000 95 |
| Hydrogen bond satisfaction | N/A N/A | N/A N/A |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 10 |
| Side chains built | 0 |
| Waters removed | 18 |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 0 |
| Residues fitting density worse | 0 |