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Structure of Bambl lectine in complex with lewix x antigen |
This entry was created with PDB-REDO version 7.32. |
From original header | |||||||
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Spacegroup | P 21 3 | a: 81.440 Å | b: 81.440 Å | c: 81.440 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
Resolution | 1.60 Å | Reflections | 23119 | Test set | 1180 (5.1%) | ||
R | 0.1530 | R-free | 0.1890 | ||||
According to PDB-REDO | |||||||
Resolution | 1.60 Å | Reflections | 23119 | Test set | 1180 (5.1%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1495 | 0.1456 |
R-free | 0.1842 | 0.1759 |
Bond length RMS Z-score | 0.707 | 0.546 |
Bond angle RMS Z-score | 0.771 | 0.730 |
Model quality | ||
Ramachandran plot normality | -0.490 68 | -0.314 73 |
Rotamer normality | 0.781 97 | 1.169 99 |
Coarse packing | 0.750 89 | 0.747 89 |
Fine packing | -1.327 39 | -1.424 35 |
Bump severity | 0.655 1 | 0.643 1 |
Hydrogen bond satisfaction | 0.836 10 | 0.843 12 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 4 |
Side chains flipped | 0 |
Waters removed | 12 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 0 |
Residues fitting density worse | 0 |