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| Crystal structure of SARS coronavirus main protease complexed with an alpha, beta-unsaturated ethyl ester SG81 |
| This entry was created with PDB-REDO version 7.00. |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | C 1 2 1 | a: 108.010 Å | b: 83.140 Å | c: 53.480 Å | α: 90.00° | β: 104.63° | γ: 90.00° |
| Resolution | 1.99 Å | Reflections | 31260 | Test set | 1583 (5.1%) | ||
| R | 0.1920 | R-free | 0.2350 | ||||
| According to PDB-REDO | |||||||
| Resolution | 1.99 Å | Reflections | 31260 | Test set | 1583 (5.1%) | ||
| Twin | false | Radiation damage | N/A | ||||
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.1982 | 0.1800 |
| R-free | 0.2420 | 0.2244 |
| Bond length RMS Z-score | 0.686 | 0.685 |
| Bond angle RMS Z-score | 0.725 | 0.804 |
| Model quality | ||
| Ramachandran plot normality | -0.537 59 | -0.346 65 |
| Rotamer normality | -2.082 39 | -1.406 54 |
| Coarse packing | -1.026 N/A | -0.924 N/A |
| Fine packing | -1.608 23 | -1.530 26 |
| Bump severity | 0.004 93 | 0.013 72 |
| Hydrogen bond satisfaction | 0.889 40 | 0.881 34 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 13 |
| Side chains flipped | 0 |
| Waters removed | 13 |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 9 |
| Residues fitting density worse | 0 |