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3rpg redone

Bmi1/Ring1b-UbcH5c complex structure

This information was created with PDB-REDO version 7.0. Please log in to request an update.

Crystallographic data
From PDB header
Spacegroup	P 32 2 1	a: 107.890 Å	b: 107.890 Å	c: 77.572 Å	α: 90.00°	β: 90.00°	γ: 120.00°
Resolution	2.65 Å	Reflections	15431	Test set	772 (5.0%)
R	0.2170	R-free	0.2430
According to PDB-REDO
Resolution	2.65 Å	Reflections	15431	Test set	772 (5.0%)	Twin	false
PDB-REDO files
Re-refined and rebuilt structure ( PDB \| mmCIF \| MTZ)		Re-refined (only) structure ( PDB \| MTZ)		All files (compressed)
Links
PDBe		RCSB PDB		3D bionotes		Proteopedia

Validation metrics from PDB-REDO
	PDB	PDB-REDO
Crystallographic refinement
R	0.2196	0.1850
R-free	0.2469	0.2511
Bond length RMS Z-score	0.204	0.544
Bond angle RMS Z-score	0.502	0.773
Model quality (raw scores \| percentiles)
Ramachandran plot appearance	-1.750 27	-1.318 36
Rotamer normality	-3.242 19	-2.666 27
Coarse packing	-0.535 N/A	-0.532 N/A
Fine packing	0.273 90	0.387 91
Bump severity	0.039 35	0.002 96
Hydrogen bond satisfaction	0.900 50	0.899 49
WHAT_CHECK	Report	Report

Kleywegt-like plot

Model quality compared to resolution neighbours

Significant model changes
Description	Count
Rotamers changed	3
Side chains flipped	0
Waters removed	3
Peptides flipped	0
Chiralities fixed	0
Residues fitting density better	50
Residues fitting density worse	0

Change in density map fit (RSCC)