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| Complement components factor H CCP19-20 and C3d in complex |
| This entry was created with PDB-REDO version 8.01. |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | P 1 | a: 74.675 Å | b: 82.990 Å | c: 85.605 Å | α: 112.75° | β: 110.14° | γ: 99.96° |
| Resolution | 2.10 Å | Reflections | 93157 | Test set | 4681 (5.0%) | ||
| R | 0.1706 | R-free | 0.2059 | ||||
| According to PDB-REDO | |||||||
| Resolution | 2.10 Å | Reflections | 93157 | Test set | 4681 (5.0%) | ||
| Twin | false | Radiation damage | N/A | ||||
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.1726 | 0.1523 |
| R-free | 0.2039 | 0.1783 |
| Bond length RMS Z-score | 0.333 | 0.583 |
| Bond angle RMS Z-score | 0.519 | 0.798 |
| Model quality | ||
| Ramachandran plot normality | -1.612 37 | 0.105 82 |
| Rotamer normality | -1.546 67 | -0.529 85 |
| Coarse packing | 0.212 72 | 0.301 76 |
| Fine packing | -1.307 40 | -0.987 54 |
| Bump severity | 0.006 70 | 0.008 64 |
| Hydrogen bond satisfaction | 0.862 18 | 0.904 56 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 43 |
| Side chains flipped | 0 |
| Waters removed | 148 |
| Peptides flipped | 2 |
| Chiralities fixed | 0 |
| Residues fitting density better | 37 |
| Residues fitting density worse | 0 |