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Lectin Domain of Lectinolysin complexed with Lewis Y Antigen |
This entry was created with PDB-REDO version 7.36. |
From original header | |||||||
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Spacegroup | P 43 21 2 | a: 67.060 Å | b: 67.060 Å | c: 98.670 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
Resolution | 2.01 Å | Reflections | 15565 | Test set | 791 (5.1%) | ||
R | 0.1930 | R-free | 0.2340 | ||||
According to PDB-REDO | |||||||
Resolution | 2.01 Å | Reflections | 15565 | Test set | 791 (5.1%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1889 | 0.1816 |
R-free | 0.2224 | 0.2185 |
Bond length RMS Z-score | 0.763 | 0.737 |
Bond angle RMS Z-score | 0.761 | 0.835 |
Model quality | ||
Ramachandran plot normality | -0.521 67 | -0.450 69 |
Rotamer normality | -1.763 63 | -1.032 77 |
Coarse packing | 0.913 93 | 0.899 92 |
Fine packing | -0.930 56 | -0.854 59 |
Bump severity | 0.208 5 | 0.189 6 |
Hydrogen bond satisfaction | 0.917 73 | 0.914 70 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 7 |
Side chains flipped | 0 |
Waters removed | 0 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 0 |
Residues fitting density worse | 0 |