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| Crystal structure of EtuB from Clostridium kluyveri |
| This entry was created with PDB-REDO version 8.06. |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | I 21 3 | a: 173.410 Å | b: 173.410 Å | c: 173.410 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
| Resolution | 3.00 Å | Reflections | 17475 | Test set | 883 (5.1%) | ||
| R | 0.1880 | R-free | 0.2034 | ||||
| According to PDB-REDO | |||||||
| Resolution | 3.00 Å | Reflections | 17475 | Test set | 883 (5.1%) | ||
| Twin | false | Radiation damage | 73 | ||||
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.1863 | 0.1643 |
| R-free | 0.2009 | 0.1832 |
| Bond length RMS Z-score | 0.847 | 0.504 |
| Bond angle RMS Z-score | 0.986 | 0.843 |
| Model quality | ||
| Ramachandran plot normality | -3.312 14 | -2.990 17 |
| Rotamer normality | -4.838 11 | -3.394 26 |
| Coarse packing | 0.727 78 | 0.756 79 |
| Fine packing | -0.280 77 | 0.030 83 |
| Bump severity | 0.036 23 | 0.033 25 |
| Hydrogen bond satisfaction | 0.854 15 | 0.889 37 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 4 |
| Side chains flipped | 0 |
| Waters removed | 0 |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 3 |
| Residues fitting density worse | 0 |