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| Newly identified epitope Mn2 from SARS-CoV M protein complexed withHLA-A*0201 |
| This entry was created with PDB-REDO version 7.00. |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | C 1 2 1 | a: 160.871 Å | b: 48.847 Å | c: 137.242 Å | α: 90.00° | β: 110.94° | γ: 90.00° |
| Resolution | 2.20 Å | Reflections | 50997 | Test set | 0 (0.0%) | ||
| R | 0.2050 | R-free | 0.2460 | ||||
| According to PDB-REDO | |||||||
| Resolution | 2.20 Å | Reflections | 50997 | Test set |
2539 (5.0%)
New test set, PDB-REDO compensated for this
|
Twin | false |
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||||
| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2101 | 0.1741 |
| R-free |
0.2674
R-free was considered biased, the
estimated unbiased R-free was used
|
0.2197 |
| Bond length RMS Z-score | 0.248 | 0.873 |
| Bond angle RMS Z-score | 0.539 | 0.971 |
| Model quality | ||
| Ramachandran plot normality | 0.229 82 | 1.336 96 |
| Rotamer normality | -2.579 29 | -1.969 41 |
| Coarse packing | -0.131 N/A | 0.014 N/A |
| Fine packing | -0.104 83 | 0.295 90 |
| Bump severity | 0.013 72 | 0.011 77 |
| Hydrogen bond satisfaction | 0.906 57 | 0.927 84 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 24 |
| Side chains flipped | 0 |
| Waters removed | 56 |
| Peptides flipped | 1 |
| Chiralities fixed | 0 |
| Residues fitting density better | 220 |
| Residues fitting density worse | 0 |