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The ectoine binding protein of the TeaABC TRAP transporter TeaA in the Apo-State |
This entry was created with PDB-REDO version 7.17. |
From original header | |||||||
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Spacegroup | P 1 21 1 | a: 74.740 Å | b: 64.980 Å | c: 121.500 Å | α: 90.00° | β: 91.06° | γ: 90.00° |
Resolution | 2.20 Å | Reflections | 57867 | Test set | 2905 (5.0%) | ||
R | 0.2170 | R-free | 0.2840 | ||||
According to PDB-REDO | |||||||
Resolution | 2.20 Å | Reflections | 57867 | Test set | 2905 (5.0%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.2190 | 0.2199 |
R-free | 0.2847 | 0.2582 |
Bond length RMS Z-score | 0.232 | 0.424 |
Bond angle RMS Z-score | 0.444 | 0.741 |
Model quality | ||
Ramachandran plot normality | -2.503 22 | -0.914 56 |
Rotamer normality | -3.800 28 | -2.181 54 |
Coarse packing | 0.009 62 | 0.315 76 |
Fine packing | -1.196 45 | -0.584 68 |
Bump severity | 0.010 58 | 0.009 61 |
Hydrogen bond satisfaction | 0.894 43 | 0.893 41 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 16 |
Side chains flipped | 4 |
Waters removed | 11 |
Peptides flipped | 1 |
Chiralities fixed | 0 |
Residues fitting density better | 24 |
Residues fitting density worse | 4 |