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Crystal structure of spike protein receptor-binding domain from the 2002-2003 SARS coronavirus civet strain complexed with human-civet chimeric receptor ACE2 |
This entry was created with PDB-REDO version 7.31. |
From original header | |||||||
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Spacegroup | P 21 | a: 80.352 Å | b: 119.841 Å | c: 109.420 Å | α: 90.00° | β: 95.89° | γ: 90.00° |
Resolution | 3.10 Å | Reflections | 38289 | Test set | 0 (0.0%) | ||
R | 0.2210 | R-free | 0.3020 | ||||
According to PDB-REDO | |||||||
Resolution | 3.05 Å | Reflections | 38289 | Test set |
1794 (4.7%)
|
Twin | false |
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.2450 | 0.2487 |
R-free |
0.2866
|
0.2720 |
Bond length RMS Z-score | 0.475 | 0.336 |
Bond angle RMS Z-score | 0.638 | 0.607 |
Model quality | ||
Ramachandran plot normality | -6.431 2 | -3.954 9 |
Rotamer normality | -5.551 11 | -3.659 30 |
Coarse packing | -1.597 5 | -1.123 13 |
Fine packing | -2.222 9 | -1.513 31 |
Bump severity | 0.030 29 | 0.026 33 |
Hydrogen bond satisfaction | 0.817 7 | 0.825 8 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 36 |
Side chains flipped | 0 |
Waters removed | 11 |
Peptides flipped | 32 |
Chiralities fixed | 0 |
Residues fitting density better | 7 |
Residues fitting density worse | 3 |