This entry is not up to date with the most recent version of PDB-REDO.
Please log in
to request an update.
| X-ray crystal structure of the SARS coronavirus spike receptor binding domain in complex with F26G19 Fab |
| This entry was created with PDB-REDO version 7.34. |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | P 21 21 2 | a: 183.688 Å | b: 73.365 Å | c: 110.782 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
| Resolution | 3.00 Å | Reflections | 30355 | Test set | 1495 (4.9%) | ||
| R | 0.2340 | R-free | 0.2860 | ||||
| According to PDB-REDO | |||||||
| Resolution | 3.00 Å | Reflections | 30355 | Test set | 1495 (4.9%) | Twin | false |
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||||
| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2534 | 0.2282 |
| R-free | 0.3084 | 0.2630 |
| Bond length RMS Z-score | 0.304 | 0.383 |
| Bond angle RMS Z-score | 0.525 | 0.644 |
| Model quality | ||
| Ramachandran plot normality | -2.866 18 | -2.365 24 |
| Rotamer normality | -2.872 42 | -2.200 54 |
| Coarse packing | -0.816 22 | -0.569 33 |
| Fine packing | -0.601 68 | -0.080 81 |
| Bump severity | 0.038 24 | 0.009 61 |
| Hydrogen bond satisfaction | 0.860 17 | 0.862 18 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 17 |
| Side chains flipped | 0 |
| Waters removed | 0 |
| Peptides flipped | 13 |
| Chiralities fixed | 0 |
| Residues fitting density better | 0 |
| Residues fitting density worse | 0 |