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X-ray crystal structure of the SARS coronavirus spike receptor binding domain in complex with F26G19 Fab |
This entry was created with PDB-REDO version 7.34. |
From original header | |||||||
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Spacegroup | P 21 21 2 | a: 183.688 Å | b: 73.365 Å | c: 110.782 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
Resolution | 3.00 Å | Reflections | 30355 | Test set | 1495 (4.9%) | ||
R | 0.2340 | R-free | 0.2860 | ||||
According to PDB-REDO | |||||||
Resolution | 3.00 Å | Reflections | 30355 | Test set | 1495 (4.9%) | Twin | false |
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
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Crystallographic refinement | ||
R | 0.2534 | 0.2282 |
R-free | 0.3084 | 0.2630 |
Bond length RMS Z-score | 0.304 | 0.383 |
Bond angle RMS Z-score | 0.525 | 0.644 |
Model quality | ||
Ramachandran plot normality | -2.866 18 | -2.365 24 |
Rotamer normality | -2.872 42 | -2.200 54 |
Coarse packing | -0.816 22 | -0.569 33 |
Fine packing | -0.601 68 | -0.080 81 |
Bump severity | 0.038 24 | 0.009 61 |
Hydrogen bond satisfaction | 0.860 17 | 0.862 18 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 17 |
Side chains flipped | 0 |
Waters removed | 0 |
Peptides flipped | 13 |
Chiralities fixed | 0 |
Residues fitting density better | 0 |
Residues fitting density worse | 0 |