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Crystal Structure of K102C-Myoglobin conjugated with Fluorescein |
This entry was created with PDB-REDO version 7.36. |
From original header | |||||||
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Spacegroup | P 6 | a: 90.409 Å | b: 90.409 Å | c: 45.320 Å | α: 90.00° | β: 90.00° | γ: 120.00° |
Resolution | 1.75 Å | Reflections | 21573 | Test set | 1103 (5.1%) | ||
R | 0.1780 | R-free | 0.1970 | ||||
According to PDB-REDO | |||||||
Resolution | 1.75 Å | Reflections | 21573 | Test set | 1103 (5.1%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1711 | 0.1660 |
R-free | 0.1899 | 0.1831 |
Bond length RMS Z-score | 0.509 | 0.636 |
Bond angle RMS Z-score | 0.713 | 0.856 |
Model quality | ||
Ramachandran plot normality | 0.104 82 | -0.200 75 |
Rotamer normality | -0.895 79 | -0.958 78 |
Coarse packing | 1.214 96 | 1.177 96 |
Fine packing | 0.622 92 | 1.124 96 |
Bump severity | 0.001 92 | 0.004 78 |
Hydrogen bond satisfaction | 0.963 99 | 0.955 98 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 6 |
Side chains flipped | 4 |
Waters removed | 0 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 0 |
Residues fitting density worse | 0 |