This entry is not up to date with the most recent version of PDB-REDO.
Please log in
to request an update.
| STRUCTURE OF LINEAR GRAMICIDIN D OBTAINED USING TYPE I CRYSTALS GROWN IN A 8.8 MONOACYLGLYCEROL LIPID CUBIC PHASE. |
| This entry was created with PDB-REDO version 8.13 using the deposited PDB model version 2.2 |
| From original header | |||||
|---|---|---|---|---|---|
| Spacegroup | P 1 21 1 | a: 30.616Å b: 62.783Å c: 30.602Å | α: 90.00° β: 100.02° γ: 90.00° | ||
| Resolution | 1.26 Å | Reflections | 29833 | Test set | 1533 (5.1%) |
| R | 0.1480 | R-free | 0.1698 | ||
| According to PDB-REDO | |||||
| Resolution | 1.26 Å | Reflections | 29833 | Test set | 1533 (5.1%) |
| Twin | true | Radiation damage | N/A | ||
| PDB-REDO files | |||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||
| Links | |||||
| PDBe | RCSB PDB | Proteopedia | |||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.1350 | 0.1387 |
| R-free | 0.1610 | 0.1490 |
| Bond length RMS Z-score | 1.680 | 0.925 |
| Bond angle RMS Z-score | 1.101 | 0.814 |
| Model quality | ||
| Ramachandran plot normality | -12.990 0 | -13.039 0 |
| Rotamer normality | -6.331 3 | -6.243 4 |
| Coarse packing | N/A N/A | N/A N/A |
| Fine packing | N/A N/A | N/A N/A |
| Bump severity | 0.000 95 | 0.000 95 |
| Hydrogen bond satisfaction | 0.667 1 | 0.667 1 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 0 |
| Side chains built | 0 |
| Waters removed | 1 |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 50 |
| Residues fitting density worse | 0 |