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| C3 convertase (C3bBb) stabilized by SCIN |
| This entry was created with PDB-REDO version 8.04 using the deposited PDB model version 2.1 |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | P 1 21 1 | a: 228.632 Å | b: 121.491 Å | c: 280.783 Å | α: 90.00° | β: 91.64° | γ: 90.00° |
| Resolution | 3.90 Å | Reflections | 137458 | Test set | 2089 (1.5%) | ||
| R | 0.2531 | R-free | 0.2679 | ||||
| According to PDB-REDO | |||||||
| Resolution | 3.90 Å | Reflections | 137458 | Test set | 2089 (1.5%) | ||
| Twin | true | Radiation damage | N/A | ||||
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||||
| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2611 | 0.1774 |
| R-free |
0.3182
R-free was considered biased, the
estimated unbiased R-free was used
|
0.2224 |
| Bond length RMS Z-score | 0.580 | 0.325 |
| Bond angle RMS Z-score | 0.787 | 0.612 |
| Model quality | ||
| Ramachandran plot normality | -4.869 5 | -4.115 8 |
| Rotamer normality | -0.867 75 | -2.984 32 |
| Coarse packing | N/A N/A | N/A N/A |
| Fine packing | N/A N/A | N/A N/A |
| Bump severity | 0.000 95 | 0.000 95 |
| Hydrogen bond satisfaction | N/A N/A | N/A N/A |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 0 |
| Side chains flipped | 0 |
| Waters removed | 0 |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 7589 |
| Residues fitting density worse | 0 |