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Complement C3b in complex with factor H domains 1-4 |
This entry was created with PDB-REDO version 8.04. |
From original header | |||||||
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Spacegroup | P 21 21 2 | a: 223.489 Å | b: 84.946 Å | c: 128.770 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
Resolution | 2.70 Å | Reflections | 67893 | Test set | 3436 (5.1%) | ||
R | 0.2167 | R-free | 0.2518 | ||||
According to PDB-REDO | |||||||
Resolution | 2.70 Å | Reflections | 67893 | Test set | 3436 (5.1%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.2220 | 0.2001 |
R-free | 0.2571 | 0.2478 |
Bond length RMS Z-score | 0.566 | 0.240 |
Bond angle RMS Z-score | 0.777 | 0.531 |
Model quality | ||
Ramachandran plot normality | -1.994 31 | -2.267 26 |
Rotamer normality | -1.188 68 | -2.434 42 |
Coarse packing | N/A N/A | N/A N/A |
Fine packing | N/A N/A | N/A N/A |
Bump severity | 0.000 95 | 0.000 95 |
Hydrogen bond satisfaction | N/A N/A | N/A N/A |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 20 |
Side chains flipped | 0 |
Waters removed | 3 |
Peptides flipped | 10 |
Chiralities fixed | 0 |
Residues fitting density better | 19 |
Residues fitting density worse | 1 |