| Complement C3b in complex with factor H domains 1-4 |
| This entry was created with PDB-REDO version 8.13 using the deposited PDB model version 2.2 |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | P 21 21 2 | a: 223.489 Å | b: 84.946 Å | c: 128.770 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
| Resolution | 2.70 Å | Reflections | 67893 | Test set | 3436 (5.1%) | ||
| R | 0.2167 | R-free | 0.2518 | ||||
| According to PDB-REDO | |||||||
| Resolution | 2.70 Å | Reflections | 67893 | Test set | 3436 (5.1%) | ||
| Twin | false | Radiation damage | 92 | ||||
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2226 | 0.1865 |
| R-free | 0.2584 | 0.2493 |
| Bond length RMS Z-score | 0.419 | 0.884 |
| Bond angle RMS Z-score | 0.603 | 0.956 |
| Model quality | ||
| Ramachandran plot normality | -1.994 31 | -2.531 23 |
| Rotamer normality | -1.188 68 | -3.750 21 |
| Coarse packing | -0.314 34 | -0.371 32 |
| Fine packing | -1.738 22 | -1.668 25 |
| Bump severity | 0.079 12 | 0.094 10 |
| Hydrogen bond satisfaction | 0.677 1 | 0.857 16 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 12 |
| Side chains flipped | 0 |
| Waters removed | 12 |
| Peptides flipped | 8 |
| Chiralities fixed | 0 |
| Residues fitting density better | 152 |
| Residues fitting density worse | 0 |