| SACCHAROMYCES CEREVISIAE GAS2P IN COMPLEX WITH LAMINARITRIOSE AND LAMINARITETRAOSE |
| This entry was created with PDB-REDO version 8.13 using the deposited PDB model version 2.2 |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | P 21 21 21 | a: 50.020 Å | b: 70.267 Å | c: 148.913 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
| Resolution | 1.90 Å | Reflections | 40087 | Test set | 509 (1.3%) | ||
| R | 0.1820 | R-free | 0.1900 | ||||
| According to PDB-REDO | |||||||
| Resolution | 1.90 Å | Reflections | 40087 | Test set | 509 (1.3%) | ||
| Twin | false | Radiation damage | 44 | ||||
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||||
| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2071 | 0.1744 |
| R-free | 0.2173 | 0.1907 |
| Bond length RMS Z-score | 0.914 | 0.232 |
| Bond angle RMS Z-score | 0.762 | 0.471 |
| Model quality | ||
| Ramachandran plot normality | -0.938 57 | -1.010 55 |
| Rotamer normality | -1.496 61 | -0.430 83 |
| Coarse packing | 0.578 73 | 0.511 71 |
| Fine packing | -0.951 55 | -1.053 51 |
| Bump severity | 0.009 59 | 0.004 76 |
| Hydrogen bond satisfaction | 0.865 19 | 0.867 20 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 5 |
| Side chains flipped | 0 |
| Waters removed | 12 |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 9 |
| Residues fitting density worse | 1 |