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SACCHAROMYCES CEREVISIAE GAS2P IN COMPLEX WITH LAMINARITRIOSE AND LAMINARITETRAOSE |
This entry was created with PDB-REDO version 7.32. |
From original header | |||||||
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Spacegroup | P 21 21 21 | a: 50.020 Å | b: 70.267 Å | c: 148.913 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
Resolution | 1.90 Å | Reflections | 40087 | Test set | 509 (1.3%) | ||
R | 0.1820 | R-free | 0.1900 | ||||
According to PDB-REDO | |||||||
Resolution | 1.90 Å | Reflections | 40087 | Test set | 509 (1.3%) | Twin | false |
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.2228 | 0.1810 |
R-free |
0.2622
|
0.1964 |
Bond length RMS Z-score | 0.543 | 0.559 |
Bond angle RMS Z-score | 0.629 | 0.735 |
Model quality | ||
Ramachandran plot normality | -1.066 51 | -1.165 48 |
Rotamer normality | -1.402 70 | -1.505 68 |
Coarse packing | -0.261 48 | -0.355 43 |
Fine packing | -1.472 33 | -1.603 27 |
Bump severity | 0.009 61 | 0.007 67 |
Hydrogen bond satisfaction | 0.887 35 | 0.882 30 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 4 |
Side chains flipped | 0 |
Waters removed | 15 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 8 |
Residues fitting density worse | 0 |