This entry is not up to date with the most recent version of PDB-REDO.
Please log in
to request an update.
| SACCHAROMYCES CEREVISIAE GAS2P IN COMPLEX WITH LAMINARITRIOSE AND LAMINARITETRAOSE |
| This entry was created with PDB-REDO version 7.32. |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | P 21 21 21 | a: 50.020 Å | b: 70.267 Å | c: 148.913 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
| Resolution | 1.90 Å | Reflections | 40087 | Test set | 509 (1.3%) | ||
| R | 0.1820 | R-free | 0.1900 | ||||
| According to PDB-REDO | |||||||
| Resolution | 1.90 Å | Reflections | 40087 | Test set | 509 (1.3%) | Twin | false |
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||||
| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2228 | 0.1810 |
| R-free |
0.2622
R-free was considered biased, the
estimated unbiased R-free was used
|
0.1964 |
| Bond length RMS Z-score | 0.543 | 0.559 |
| Bond angle RMS Z-score | 0.629 | 0.735 |
| Model quality | ||
| Ramachandran plot normality | -1.066 51 | -1.165 48 |
| Rotamer normality | -1.402 70 | -1.505 68 |
| Coarse packing | -0.261 48 | -0.355 43 |
| Fine packing | -1.472 33 | -1.603 27 |
| Bump severity | 0.009 61 | 0.007 67 |
| Hydrogen bond satisfaction | 0.887 35 | 0.882 30 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 4 |
| Side chains flipped | 0 |
| Waters removed | 15 |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 8 |
| Residues fitting density worse | 0 |