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2w62 redone

Saccharomyces cerevisiae Gas2p in complex with laminaripentaose

This information was created with PDB-REDO version 7.32. Please log in to request an update.

Crystallographic data
From PDB header
Spacegroup	P 21 21 21	a: 50.039 Å	b: 70.841 Å	c: 149.149 Å	α: 90.00°	β: 90.00°	γ: 90.00°
Resolution	1.85 Å	Reflections	45861	Test set	555 (1.2%)
R	0.1830	R-free	0.2100
According to PDB-REDO
Resolution	1.85 Å	Reflections	45861	Test set	555 (1.2%)	Twin	false
PDB-REDO files
Re-refined and rebuilt structure ( PDB \| mmCIF \| MTZ)		Re-refined (only) structure ( PDB \| MTZ)		All files (compressed)
Links
PDBe		RCSB PDB		3D bionotes		Proteopedia

Validation metrics from PDB-REDO
	PDB	PDB-REDO
Crystallographic refinement
R	0.2331	0.1750
R-free	0.2730 R-free was considered biased, the estimated unbiased R-free was used.	0.1938
Bond length RMS Z-score	0.521	0.559
Bond angle RMS Z-score	0.621	0.708
Model quality (raw scores \| percentiles)
Ramachandran plot appearance	-1.297 45	-1.700 36
Rotamer normality	-1.282 72	-1.068 76
Coarse packing	-0.444 39	-0.487 37
Fine packing	-1.736 22	-1.636 26
Bump severity	0.005 74	0.002 87
Hydrogen bond satisfaction	0.879 28	0.884 32
WHAT_CHECK	Report	Report

Kleywegt-like plot

Model quality compared to resolution neighbours

Significant model changes
Description	Count
Rotamers changed	3
Side chains flipped	0
Waters removed	12
Peptides flipped	0
Chiralities fixed	0
Residues fitting density better	35
Residues fitting density worse	0

Change in density map fit (RSCC)