This entry is not up to date with the most recent version of PDB-REDO.
Please log in
to request an update.
Saccharomyces cerevisiae Gas2p in complex with laminaripentaose |
This entry was created with PDB-REDO version 7.32. |
From original header | |||||||
---|---|---|---|---|---|---|---|
Spacegroup | P 21 21 21 | a: 50.039 Å | b: 70.841 Å | c: 149.149 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
Resolution | 1.85 Å | Reflections | 45861 | Test set | 555 (1.2%) | ||
R | 0.1830 | R-free | 0.2100 | ||||
According to PDB-REDO | |||||||
Resolution | 1.85 Å | Reflections | 45861 | Test set | 555 (1.2%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||||
Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.2331 | 0.1750 |
R-free | 0.2730 R-free was considered biased, the estimated unbiased R-free was used | 0.1938 |
Bond length RMS Z-score | 0.521 | 0.559 |
Bond angle RMS Z-score | 0.621 | 0.708 |
Model quality | ||
Ramachandran plot normality | -1.297 45 | -1.700 36 |
Rotamer normality | -1.282 72 | -1.068 76 |
Coarse packing | -0.444 39 | -0.487 37 |
Fine packing | -1.736 22 | -1.636 26 |
Bump severity | 0.005 74 | 0.002 87 |
Hydrogen bond satisfaction | 0.879 28 | 0.884 32 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 3 |
Side chains flipped | 0 |
Waters removed | 12 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 35 |
Residues fitting density worse | 0 |