| 3Fe-4S, 4Fe-4S plus Zn Acidianus ambivalens ferredoxin |
| This entry was created with PDB-REDO version 8.22 using the deposited PDB model version 1.7 |
| From original header | |||||
|---|---|---|---|---|---|
| Spacegroup | P 31 | a: 117.500Å b: 117.500Å c: 50.900Å | α: 90.00° β: 90.00° γ: 120.00° | ||
| Resolution | 2.01 Å | Reflections | 52094 | Test set | 2491 (4.8%) |
| R | 0.2200 | R-free | 0.2730 | ||
| According to PDB-REDO | |||||
| Resolution | 2.01 Å | Reflections | 52094 | Test set | 2491 (4.8%) |
| Twin | true | Radiation damage | 54 | ||
| PDB-REDO files | |||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||
| Links | |||||
| PDBe | RCSB PDB | Proteopedia | |||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2927 | 0.1471 |
| R-free |
0.3467
R-free was considered biased, the
estimated unbiased R-free was used
|
0.1849 |
| Bond length RMS Z-score | 1.034 | 0.453 |
| Bond angle RMS Z-score | 1.132 | 0.640 |
| Model quality | ||
| Ramachandran plot normality | -2.143 29 | -1.716 37 |
| Rotamer normality | -4.857 11 | -3.506 25 |
| Coarse packing | N/A N/A | N/A N/A |
| Fine packing | N/A N/A | N/A N/A |
| MolProbity Clashscore | 19.520 8 | 4.020 63 |
| Hydrogen bond satisfaction | N/A N/A | N/A N/A |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | N/A |
| Side chains built | 0 |
| Waters removed | N/A |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 738 |
| Residues fitting density worse | 0 |