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| STRUCTURE OF HUMAN IGF2R DOMAINS 11-14 |
| This entry was created with PDB-REDO version 8.13 using the deposited PDB model version 1.5 |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | C 1 2 1 | a: 138.554 Å | b: 69.247 Å | c: 98.012 Å | α: 90.00° | β: 103.25° | γ: 90.00° |
| Resolution | 2.91 Å | Reflections | 19917 | Test set | 1024 (5.1%) | ||
| R | 0.2570 | R-free | 0.3040 | ||||
| According to PDB-REDO | |||||||
| Resolution | 2.90 Å | Reflections | 19917 | Test set | 1024 (5.1%) | ||
| Twin | false | Radiation damage | 58 | ||||
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2717 | 0.2160 |
| R-free | 0.3116 | 0.2825 |
| Bond length RMS Z-score | 0.633 | 0.257 |
| Bond angle RMS Z-score | 0.667 | 0.533 |
| Model quality | ||
| Ramachandran plot normality | -3.533 12 | -3.560 12 |
| Rotamer normality | -4.674 12 | -4.079 18 |
| Coarse packing | -1.496 4 | -1.284 7 |
| Fine packing | -1.885 17 | -1.665 25 |
| Bump severity | 0.293 3 | 0.274 4 |
| Hydrogen bond satisfaction | 0.812 7 | 0.822 8 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 8 |
| Side chains built | 3 |
| Waters removed | 0 |
| Peptides flipped | 26 |
| Chiralities fixed | 0 |
| Residues fitting density better | 18 |
| Residues fitting density worse | 0 |