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Mouse Scavenger Receptor C-type Lectin carbohydrate-recognition domain. |
This entry was created with PDB-REDO version 7.32. |
From original header | |||||||
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Spacegroup | P 1 | a: 47.998 Å | b: 53.755 Å | c: 59.084 Å | α: 67.75° | β: 76.70° | γ: 85.37° |
Resolution | 1.95 Å | Reflections | 35627 | Test set | 1785 (5.0%) | ||
R | 0.2240 | R-free | 0.2730 | ||||
According to PDB-REDO | |||||||
Resolution | 1.95 Å | Reflections | 35627 | Test set | 1785 (5.0%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.2214 | 0.1885 |
R-free | 0.2695 | 0.2152 |
Bond length RMS Z-score | 0.283 | 0.563 |
Bond angle RMS Z-score | 0.641 | 0.774 |
Model quality | ||
Ramachandran plot normality | -2.901 17 | -0.868 57 |
Rotamer normality | -3.160 37 | -1.119 75 |
Coarse packing | -0.423 40 | -0.173 53 |
Fine packing | -3.024 2 | -2.652 4 |
Bump severity | 0.210 5 | 0.203 5 |
Hydrogen bond satisfaction | 0.847 13 | 0.842 11 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 5 |
Side chains flipped | 0 |
Waters removed | 18 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 5 |
Residues fitting density worse | 0 |