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Structure of the human voltage-dependent anion channel |
This entry was created with PDB-REDO version 8.08. |
From original header | |||||||
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Spacegroup | P 32 2 1 | a: 77.990 Å | b: 77.990 Å | c: 167.040 Å | α: 90.00° | β: 90.00° | γ: 120.00° |
Resolution | 4.10 Å | Reflections | 4525 | Test set | 0 (0.0%) | ||
R | 0.3250 | R-free | 0.3873 | ||||
According to PDB-REDO | |||||||
Resolution | 4.10 Å | Reflections | 4525 | Test set |
472 (10.4%)
|
||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.3990 | 0.3929 |
R-free |
0.4668
|
0.4100 |
Bond length RMS Z-score | 0.453 | 0.222 |
Bond angle RMS Z-score | 1.168 | 0.447 |
Model quality | ||
Ramachandran plot normality | -5.905 2 | -5.343 4 |
Rotamer normality | -6.529 3 | -4.895 10 |
Coarse packing | -3.303 0 | -3.007 0 |
Fine packing | -3.823 1 | -3.701 1 |
Bump severity | 0.463 2 | 0.020 37 |
Hydrogen bond satisfaction | 0.719 2 | 0.737 2 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 5 |
Side chains flipped | 0 |
Waters removed | 0 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 0 |
Residues fitting density worse | 129 |