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| Crystal structure of Monomeric Actin in its ATP-bound state |
| This entry was created with PDB-REDO version 8.01 using the deposited PDB model version 1.4 |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | C 1 2 1 | a: 199.700 Å | b: 54.070 Å | c: 39.590 Å | α: 90.00° | β: 93.16° | γ: 90.00° |
| Resolution | 1.80 Å | Reflections | 37194 | Test set | 3286 (8.8%) | ||
| R | 0.1810 | R-free | 0.2110 | ||||
| According to PDB-REDO | |||||||
| Resolution | 1.80 Å | Reflections | 37194 | Test set | 3286 (8.8%) | ||
| Twin | false | Radiation damage | N/A | ||||
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.1736 | 0.1498 |
| R-free | 0.2014 | 0.1935 |
| Bond length RMS Z-score | 0.249 | 0.749 |
| Bond angle RMS Z-score | 0.571 | 0.893 |
| Model quality | ||
| Ramachandran plot normality | -0.781 59 | 0.058 81 |
| Rotamer normality | -0.661 83 | -0.446 86 |
| Coarse packing | 0.989 94 | 0.961 93 |
| Fine packing | -0.225 78 | -0.022 82 |
| Bump severity | 0.004 78 | 0.007 67 |
| Hydrogen bond satisfaction | 0.903 54 | 0.904 56 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 8 |
| Side chains built | 6 |
| Waters removed | 49 |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 5 |
| Residues fitting density worse | 0 |