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| Crystal Structure of alpha-Amino-beta-Carboxymuconate-epsilon- Semialdehyde-Decarboxylase (ACMSD) |
| This entry was created with PDB-REDO version 8.04 using the deposited PDB model version 1.4 |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | C 1 2 1 | a: 153.557 Å | b: 48.107 Å | c: 110.700 Å | α: 90.00° | β: 127.31° | γ: 90.00° |
| Resolution | 1.65 Å | Reflections | 69090 | Test set | 3532 (5.1%) | ||
| R | 0.2110 | R-free | 0.2510 | ||||
| According to PDB-REDO | |||||||
| Resolution | 1.65 Å | Reflections | 69090 | Test set | 3532 (5.1%) | ||
| Twin | false | Radiation damage | N/A | ||||
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2370 | 0.2062 |
| R-free | 0.2779 | 0.2459 |
| Bond length RMS Z-score | 1.468 | 0.564 |
| Bond angle RMS Z-score | 0.712 | 0.737 |
| Model quality | ||
| Ramachandran plot normality | -1.877 33 | -1.228 49 |
| Rotamer normality | -1.969 51 | -1.088 70 |
| Coarse packing | N/A N/A | N/A N/A |
| Fine packing | N/A N/A | N/A N/A |
| Bump severity | 0.000 95 | 0.000 95 |
| Hydrogen bond satisfaction | N/A N/A | N/A N/A |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 12 |
| Side chains built | 0 |
| Waters removed | 164 |
| Peptides flipped | 1 |
| Chiralities fixed | 0 |
| Residues fitting density better | 90 |
| Residues fitting density worse | 1 |