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Crystal Structure of Nsp 15 from SARS |
This entry was created with PDB-REDO version 7.36. |
From original header | |||||||
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Spacegroup | P 43 3 2 | a: 166.570 Å | b: 166.570 Å | c: 166.570 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
Resolution | 2.60 Å | Reflections | 24880 | Test set | 1264 (5.1%) | ||
R | 0.2080 | R-free | 0.2400 | ||||
According to PDB-REDO | |||||||
Resolution | 2.60 Å | Reflections | 24880 | Test set | 1264 (5.1%) | Twin | false |
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.2105 | 0.1907 |
R-free | 0.2460 | 0.2330 |
Bond length RMS Z-score | 0.459 | 0.461 |
Bond angle RMS Z-score | 0.663 | 0.713 |
Model quality | ||
Ramachandran plot normality | -1.420 42 | -1.527 39 |
Rotamer normality | -2.246 53 | -1.875 60 |
Coarse packing | -0.876 20 | -0.711 26 |
Fine packing | -1.438 34 | -1.090 49 |
Bump severity | 0.009 61 | 0.004 78 |
Hydrogen bond satisfaction | 0.913 68 | 0.904 56 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 14 |
Side chains flipped | 0 |
Waters removed | 2 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 1 |
Residues fitting density worse | 0 |