This entry is not up to date with the most recent version of PDB-REDO.
Please log in
to request an update.
| Crystal Structure of Nsp 15 from SARS |
| This entry was created with PDB-REDO version 7.36. |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | P 43 3 2 | a: 166.570 Å | b: 166.570 Å | c: 166.570 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
| Resolution | 2.60 Å | Reflections | 24880 | Test set | 1264 (5.1%) | ||
| R | 0.2080 | R-free | 0.2400 | ||||
| According to PDB-REDO | |||||||
| Resolution | 2.60 Å | Reflections | 24880 | Test set | 1264 (5.1%) | Twin | false |
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||||
| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2105 | 0.1907 |
| R-free | 0.2460 | 0.2330 |
| Bond length RMS Z-score | 0.459 | 0.461 |
| Bond angle RMS Z-score | 0.663 | 0.713 |
| Model quality | ||
| Ramachandran plot normality | -1.420 42 | -1.527 39 |
| Rotamer normality | -2.246 53 | -1.875 60 |
| Coarse packing | -0.876 20 | -0.711 26 |
| Fine packing | -1.438 34 | -1.090 49 |
| Bump severity | 0.009 61 | 0.004 78 |
| Hydrogen bond satisfaction | 0.913 68 | 0.904 56 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 14 |
| Side chains flipped | 0 |
| Waters removed | 2 |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 1 |
| Residues fitting density worse | 0 |