| Crystal Structure of anti-SARS m396 Antibody |
| This entry was created with PDB-REDO version 8.12 using the deposited PDB model version 1.4 |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | P 31 | a: 69.066 Å | b: 69.066 Å | c: 166.656 Å | α: 90.00° | β: 90.00° | γ: 120.00° |
| Resolution | 2.28 Å | Reflections | 34045 | Test set | 1679 (4.9%) | ||
| R | 0.2210 | R-free | 0.2770 | ||||
| According to PDB-REDO | |||||||
| Resolution | 2.28 Å | Reflections | 34045 | Test set | 1679 (4.9%) | ||
| Twin | true | Radiation damage | 29 | ||||
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||||
| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2224 | 0.1736 |
| R-free | 0.2653 | 0.2099 |
| Bond length RMS Z-score | 0.625 | 0.693 |
| Bond angle RMS Z-score | 0.788 | 0.840 |
| Model quality | ||
| Ramachandran plot normality | -2.749 20 | -1.746 36 |
| Rotamer normality | -2.380 43 | -2.626 39 |
| Coarse packing | -0.056 46 | -0.067 46 |
| Fine packing | 0.361 89 | 0.315 88 |
| Bump severity | 0.034 25 | 0.027 30 |
| Hydrogen bond satisfaction | 0.882 30 | 0.888 36 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 12 |
| Side chains flipped | 0 |
| Waters removed | 6 |
| Peptides flipped | 1 |
| Chiralities fixed | 0 |
| Residues fitting density better | 829 |
| Residues fitting density worse | 0 |