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Crystal Structure of anti-SARS m396 Antibody |
This entry was created with PDB-REDO version 8.01. |
From original header | |||||||
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Spacegroup | P 31 | a: 69.066 Å | b: 69.066 Å | c: 166.656 Å | α: 90.00° | β: 90.00° | γ: 120.00° |
Resolution | 2.28 Å | Reflections | 34045 | Test set | 1679 (4.9%) | ||
R | 0.2210 | R-free | 0.2770 | ||||
According to PDB-REDO | |||||||
Resolution | 2.28 Å | Reflections | 34045 | Test set | 1679 (4.9%) | Twin | false |
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.2216 | 0.1929 |
R-free | 0.2640 | 0.2255 |
Bond length RMS Z-score | 0.339 | 0.546 |
Bond angle RMS Z-score | 0.643 | 0.830 |
Model quality | ||
Ramachandran plot normality | -2.749 19 | -1.484 40 |
Rotamer normality | -2.380 51 | -2.115 56 |
Coarse packing | -0.056 59 | -0.006 62 |
Fine packing | 0.191 86 | 0.439 89 |
Bump severity | 0.034 26 | 0.016 45 |
Hydrogen bond satisfaction | 0.888 36 | 0.907 60 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 5 |
Side chains flipped | 0 |
Waters removed | 27 |
Peptides flipped | 2 |
Chiralities fixed | 0 |
Residues fitting density better | 28 |
Residues fitting density worse | 0 |