Crystal Structure of anti-SARS m396 Antibody |
This entry was created with PDB-REDO version 8.12. |
From original header | |||||||
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Spacegroup | P 31 | a: 69.066 Å | b: 69.066 Å | c: 166.656 Å | α: 90.00° | β: 90.00° | γ: 120.00° |
Resolution | 2.28 Å | Reflections | 34045 | Test set | 1679 (4.9%) | ||
R | 0.2210 | R-free | 0.2770 | ||||
According to PDB-REDO | |||||||
Resolution | 2.28 Å | Reflections | 34045 | Test set | 1679 (4.9%) | ||
Twin | true | Radiation damage | 29 | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
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Crystallographic refinement | ||
R | 0.2224 | 0.1736 |
R-free | 0.2653 | 0.2099 |
Bond length RMS Z-score | 0.625 | 0.693 |
Bond angle RMS Z-score | 0.788 | 0.840 |
Model quality | ||
Ramachandran plot normality | -2.749 20 | -1.746 36 |
Rotamer normality | -2.380 43 | -2.626 39 |
Coarse packing | -0.056 46 | -0.067 46 |
Fine packing | 0.361 89 | 0.315 88 |
Bump severity | 0.034 25 | 0.027 30 |
Hydrogen bond satisfaction | 0.882 30 | 0.888 36 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 12 |
Side chains flipped | 0 |
Waters removed | 6 |
Peptides flipped | 1 |
Chiralities fixed | 0 |
Residues fitting density better | 829 |
Residues fitting density worse | 0 |