| A Src-like Inactive Conformation in the Abl Tyrosine Kinase Domain |
| This entry was created with PDB-REDO version 8.13. |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | P 21 21 2 | a: 105.669 Å | b: 133.322 Å | c: 56.576 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
| Resolution | 2.70 Å | Reflections | 27408 | Test set | 1376 (5.0%) | ||
| R | 0.2320 | R-free | 0.2860 | ||||
| According to PDB-REDO | |||||||
| Resolution | 2.51 Å | Reflections | 27408 | Test set | 1376 (5.0%) | ||
| Twin | false | Radiation damage | 91 | ||||
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2937 | 0.2194 |
| R-free | 0.3381 | 0.2562 |
| Bond length RMS Z-score | 0.865 | 0.290 |
| Bond angle RMS Z-score | 0.832 | 0.497 |
| Model quality | ||
| Ramachandran plot normality | -4.028 9 | -0.905 58 |
| Rotamer normality | -3.659 23 | -2.052 50 |
| Coarse packing | -0.407 31 | 0.129 55 |
| Fine packing | -0.269 77 | 0.384 89 |
| Bump severity | 0.023 34 | 0.005 72 |
| Hydrogen bond satisfaction | 0.863 18 | 0.712 2 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 8 |
| Side chains flipped | 5 |
| Waters removed | 8 |
| Peptides flipped | 2 |
| Chiralities fixed | 0 |
| Residues fitting density better | 5 |
| Residues fitting density worse | 0 |