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| Structure of a Proteolytically Resistant Core from the Severe Acute Respiratory Syndrome Coronavirus S2 Fusion Protein |
| This entry was created with PDB-REDO version 7.29. |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | C 1 2 1 | a: 99.907 Å | b: 42.903 Å | c: 59.826 Å | α: 90.00° | β: 116.69° | γ: 90.00° |
| Resolution | 1.60 Å | Reflections | 29972 | Test set | 1521 (5.1%) | ||
| R | 0.1990 | R-free | 0.2410 | ||||
| According to PDB-REDO | |||||||
| Resolution | 1.60 Å | Reflections | 29972 | Test set | 1521 (5.1%) | Twin | false |
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2026 | 0.1896 |
| R-free | 0.2458 | 0.2237 |
| Bond length RMS Z-score | 0.729 | 0.420 |
| Bond angle RMS Z-score | 0.815 | 0.566 |
| Model quality | ||
| Ramachandran plot normality | 0.604 90 | 1.724 98 |
| Rotamer normality | -2.584 47 | 0.361 95 |
| Coarse packing | 1.778 99 | 2.016 99 |
| Fine packing | 0.807 94 | 1.884 98 |
| Bump severity | 0.012 53 | 0.001 92 |
| Hydrogen bond satisfaction | 0.972 99 | 0.961 99 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 12 |
| Side chains flipped | 1 |
| Waters removed | 56 |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 5 |
| Residues fitting density worse | 1 |