| Structure of a Proteolytically Resistant Core from the Severe Acute Respiratory Syndrome Coronavirus S2 Fusion Protein |
| This entry was created with PDB-REDO version 8.13 using the deposited PDB model version 1.4 |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | C 1 2 1 | a: 99.907 Å | b: 42.903 Å | c: 59.826 Å | α: 90.00° | β: 116.69° | γ: 90.00° |
| Resolution | 1.60 Å | Reflections | 29972 | Test set | 1521 (5.1%) | ||
| R | 0.1990 | R-free | 0.2410 | ||||
| According to PDB-REDO | |||||||
| Resolution | 1.60 Å | Reflections | 29972 | Test set | 1521 (5.1%) | ||
| Twin | false | Radiation damage | 54 | ||||
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2031 | 0.1829 |
| R-free | 0.2455 | 0.2248 |
| Bond length RMS Z-score | 1.158 | 0.446 |
| Bond angle RMS Z-score | 1.086 | 0.604 |
| Model quality | ||
| Ramachandran plot normality | -0.295 75 | 1.351 97 |
| Rotamer normality | -2.248 46 | 0.888 97 |
| Coarse packing | 3.030 99 | 3.190 100 |
| Fine packing | 1.397 97 | 2.150 98 |
| Bump severity | 0.012 51 | 0.005 72 |
| Hydrogen bond satisfaction | 0.950 97 | 0.955 98 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 13 |
| Side chains flipped | 1 |
| Waters removed | 61 |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 42 |
| Residues fitting density worse | 0 |