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Post-fusion hairpin conformation of the sars coronavirus spike glycoprotein |
This entry was created with PDB-REDO version 7.00. |
From original header | |||||||
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Spacegroup | H 3 | a: 41.983 Å | b: 41.983 Å | c: 320.544 Å | α: 90.00° | β: 90.00° | γ: 120.00° |
Resolution | 2.20 Å | Reflections | 9636 | Test set | 0 (0.0%) | ||
R | 0.2100 | R-free | 0.2490 | ||||
According to PDB-REDO | |||||||
Resolution | 2.21 Å | Reflections | 9636 | Test set |
986 (10.2%)
|
Twin | false |
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.2112 | 0.1983 |
R-free |
0.3062
|
0.2430 |
Bond length RMS Z-score | 0.288 | 0.404 |
Bond angle RMS Z-score | 0.449 | 0.515 |
Model quality | ||
Ramachandran plot normality | -1.073 42 | 1.239 96 |
Rotamer normality | -1.940 42 | -1.631 48 |
Coarse packing | 1.647 N/A | 1.690 N/A |
Fine packing | 3.189 99 | 3.614 100 |
Bump severity | 0.009 81 | 0.001 98 |
Hydrogen bond satisfaction | 0.958 99 | 0.949 98 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 3 |
Side chains flipped | 0 |
Waters removed | 33 |
Peptides flipped | 2 |
Chiralities fixed | 0 |
Residues fitting density better | 15 |
Residues fitting density worse | 1 |