This entry is not up to date with the most recent version of PDB-REDO.
Please log in
to request an update.
Crystal structure of the SARS-CoV Spike protein fusion core |
This entry was created with PDB-REDO version 7.36. |
From original header | |||||||
---|---|---|---|---|---|---|---|
Spacegroup | C 1 2 1 | a: 121.215 Å | b: 66.316 Å | c: 69.976 Å | α: 90.00° | β: 107.35° | γ: 90.00° |
Resolution | 2.80 Å | Reflections | 10724 | Test set | 554 (5.2%) | ||
R | 0.2330 | R-free | 0.2730 | ||||
According to PDB-REDO | |||||||
Resolution | 2.80 Å | Reflections | 10724 | Test set | 554 (5.2%) | Twin | false |
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||||
Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.2412 | 0.2960 |
R-free | 0.2837 | 0.3346 |
Bond length RMS Z-score | 0.587 | 0.553 |
Bond angle RMS Z-score | 0.810 | 0.782 |
Model quality | ||
Ramachandran plot normality | -9.438 0 | -6.368 2 |
Rotamer normality | -6.382 6 | -5.212 13 |
Coarse packing | -2.500 1 | 0.338 77 |
Fine packing | -4.310 0 | -0.312 76 |
Bump severity | 0.382 2 | 0.082 12 |
Hydrogen bond satisfaction | 0.781 4 | 0.895 44 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 18 |
Side chains flipped | 8 |
Waters removed | 278 |
Peptides flipped | 3 |
Chiralities fixed | 0 |
Residues fitting density better | 0 |
Residues fitting density worse | 1 |