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Crystal structure of SARS Coronavirus Main Proteinase (3CLpro) At pH8.0 |
This entry was created with PDB-REDO version 8.04 using the deposited PDB model version 1.3 |
From original header | |||||||
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Spacegroup | P 1 21 1 | a: 49.485 Å | b: 97.426 Å | c: 67.535 Å | α: 90.00° | β: 101.70° | γ: 90.00° |
Resolution | 2.20 Å | Reflections | 29475 | Test set | 1469 (5.0%) | ||
R | 0.2260 | R-free | 0.2530 | ||||
According to PDB-REDO | |||||||
Resolution | 2.21 Å | Reflections | 29475 | Test set | 1469 (5.0%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.2211 | 0.2090 |
R-free | 0.2499 | 0.2402 |
Bond length RMS Z-score | 1.903 | 0.343 |
Bond angle RMS Z-score | 1.471 | 0.652 |
Model quality | ||
Ramachandran plot normality | -3.177 15 | -1.049 54 |
Rotamer normality | -3.943 19 | -2.034 50 |
Coarse packing | N/A N/A | N/A N/A |
Fine packing | N/A N/A | N/A N/A |
Bump severity | 0.000 95 | 0.000 95 |
Hydrogen bond satisfaction | N/A N/A | N/A N/A |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 11 |
Side chains flipped | 0 |
Waters removed | 6 |
Peptides flipped | 5 |
Chiralities fixed | 0 |
Residues fitting density better | 0 |
Residues fitting density worse | 0 |