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| MP1-p14 Complex |
| This entry was created with PDB-REDO version 8.08 using the deposited PDB model version 1.3 |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | P 21 21 21 | a: 50.974 Å | b: 64.193 Å | c: 73.280 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
| Resolution | 2.00 Å | Reflections | 16793 | Test set | 854 (5.1%) | ||
| R | 0.2011 | R-free | 0.2709 | ||||
| According to PDB-REDO | |||||||
| Resolution | 2.00 Å | Reflections | 16793 | Test set | 854 (5.1%) | ||
| Twin | false | Radiation damage | 20 | ||||
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2025 | 0.1825 |
| R-free | 0.2711 | 0.2319 |
| Bond length RMS Z-score | 1.285 | 0.305 |
| Bond angle RMS Z-score | 1.085 | 0.594 |
| Model quality | ||
| Ramachandran plot normality | -1.101 53 | -0.491 70 |
| Rotamer normality | -2.996 32 | -0.296 85 |
| Coarse packing | 1.850 96 | 1.957 97 |
| Fine packing | -0.510 71 | 0.082 84 |
| Bump severity | 0.020 37 | 0.023 34 |
| Hydrogen bond satisfaction | 0.929 86 | 0.951 97 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 7 |
| Side chains built | 0 |
| Waters removed | 83 |
| Peptides flipped | 1 |
| Chiralities fixed | 0 |
| Residues fitting density better | 3 |
| Residues fitting density worse | 1 |