This entry is not up to date with the most recent version of PDB-REDO.
Please log in
to request an update.
WILD TYPE MYOGLOBIN WITH CO |
This entry was created with PDB-REDO version 8.04. |
From original header | |||||||
---|---|---|---|---|---|---|---|
Spacegroup | I 1 21 1 | a: 122.180 Å | b: 42.170 Å | c: 91.670 Å | α: 90.00° | β: 92.61° | γ: 90.00° |
Resolution | 1.70 Å | Reflections | 48082 | Test set | 2426 (5.0%) | ||
R | 0.1886 | R-free | 0.2370 | ||||
According to PDB-REDO | |||||||
Resolution | 1.70 Å | Reflections | 48082 | Test set | 2426 (5.0%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||||
Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1939 | 0.1462 |
R-free | 0.2386 | 0.1926 |
Bond length RMS Z-score | 2.107 | 0.678 |
Bond angle RMS Z-score | 1.880 | 0.690 |
Model quality | ||
Ramachandran plot normality | -0.824 60 | 1.113 96 |
Rotamer normality | -2.036 50 | -0.122 88 |
Coarse packing | N/A N/A | N/A N/A |
Fine packing | N/A N/A | N/A N/A |
Bump severity | 0.000 95 | 0.000 95 |
Hydrogen bond satisfaction | N/A N/A | N/A N/A |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 14 |
Side chains flipped | 3 |
Waters removed | 167 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 84 |
Residues fitting density worse | 0 |