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| NON-FCRN BINDING FC FRAGMENT OF RAT IGG2A |
| This entry was created with PDB-REDO version 8.13 using the deposited PDB model version 2.3 |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | P 1 21 1 | a: 42.503 Å | b: 73.362 Å | c: 82.157 Å | α: 90.00° | β: 102.74° | γ: 90.00° |
| Resolution | 2.70 Å | Reflections | 13471 | Test set | 1375 (10.2%) | ||
| R | 0.2410 | R-free | 0.2790 | ||||
| According to PDB-REDO | |||||||
| Resolution | 2.70 Å | Reflections | 13471 | Test set | 1375 (10.2%) | ||
| Twin | false | Radiation damage | 34 | ||||
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2423 | 0.1996 |
| R-free | 0.2780 | 0.2357 |
| Bond length RMS Z-score | 0.620 | 0.288 |
| Bond angle RMS Z-score | 0.806 | 0.491 |
| Model quality | ||
| Ramachandran plot normality | -2.139 29 | -0.880 59 |
| Rotamer normality | -1.806 55 | -1.156 69 |
| Coarse packing | -0.273 36 | -0.273 36 |
| Fine packing | -1.297 40 | -1.244 43 |
| Bump severity | 0.448 2 | 0.455 2 |
| Hydrogen bond satisfaction | 0.850 14 | 0.843 12 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 14 |
| Side chains built | 0 |
| Waters removed | 0 |
| Peptides flipped | 4 |
| Chiralities fixed | 0 |
| Residues fitting density better | 9 |
| Residues fitting density worse | 0 |