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| CRYSTAL STRUCTURE ANALYSIS OF A MUTANT P4-P6 DOMAIN (DELC209) OF TETRAHYMENA THEMOPHILA GROUP I INTRON. |
| This entry was created with PDB-REDO version 8.01 using the deposited PDB model version 1.3 |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | P 21 21 21 | a: 75.300 Å | b: 125.400 Å | c: 145.700 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
| Resolution | 2.25 Å | Reflections | 60693 | Test set | 3019 (5.0%) | ||
| R | 0.2440 | R-free | 0.2640 | ||||
| According to PDB-REDO | |||||||
| Resolution | 2.25 Å | Reflections | 60693 | Test set | 3019 (5.0%) | ||
| Twin | false | Radiation damage | N/A | ||||
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2509 | 0.2145 |
| R-free | 0.2749 | 0.2370 |
| Bond length RMS Z-score | 0.489 | 0.705 |
| Bond angle RMS Z-score | 0.774 | 1.300 |
| Model quality | ||
| Coarse packing | N/A N/A | N/A N/A |
| Fine packing | N/A N/A | N/A N/A |
| Dinucleotide conformation (CONFAL) | 53.5 66 | 50.7 59 |
| Base pair conformation | 2.0 46 | 1.3 75 |
| Bump severity | 0.091 11 | 0.048 20 |
| Hydrogen bond satisfaction | N/A N/A | N/A N/A |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 0 |
| Side chains flipped | 0 |
| Waters removed | 109 |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 156 |
| Residues fitting density worse | 0 |