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CALPONIN HOMOLOGY (CH) DOMAIN FROM HUMAN BETA-SPECTRIN AT 1.1 ANGSTROM RESOLUTION |
This entry was created with PDB-REDO version 8.04. |
From original header | |||||||
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Spacegroup | P 1 21 1 | a: 31.650 Å | b: 53.953 Å | c: 32.354 Å | α: 90.00° | β: 105.48° | γ: 90.00° |
Resolution | 1.10 Å | Reflections | 42165 | Test set | 2114 (5.0%) | ||
R | N/A | R-free | N/A | ||||
According to PDB-REDO | |||||||
Resolution | 1.10 Å | Reflections | 42165 | Test set | 2114 (5.0%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1331 | 0.1326 |
R-free |
0.1549
|
0.1543 |
Bond length RMS Z-score | 1.261 | 0.978 |
Bond angle RMS Z-score | 1.438 | 0.758 |
Model quality | ||
Ramachandran plot normality | 1.566 98 | 1.234 96 |
Rotamer normality | -1.321 65 | 0.385 94 |
Coarse packing | N/A N/A | N/A N/A |
Fine packing | N/A N/A | N/A N/A |
Bump severity | 0.000 95 | 0.000 95 |
Hydrogen bond satisfaction | N/A N/A | N/A N/A |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 7 |
Side chains flipped | 0 |
Waters removed | 40 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 12 |
Residues fitting density worse | 6 |