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Glycosylation in the crystal structure of neutrophil myeloperoxidase |
This entry was created with PDB-REDO version 8.04. |
From original header | |||||||
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Spacegroup | C 1 2 1 | a: 155.910 Å | b: 144.634 Å | c: 236.454 Å | α: 90.00° | β: 91.53° | γ: 90.00° |
Resolution | 2.60 Å | Reflections | 143788 | Test set | 1826 (1.3%) | ||
R | 0.1788 | R-free | 0.2195 | ||||
According to PDB-REDO | |||||||
Resolution | 2.60 Å | Reflections | 143788 | Test set | 1826 (1.3%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1650 | 0.1773 |
R-free | 0.2117 | 0.2153 |
Bond length RMS Z-score | 7.868 | 0.361 |
Bond angle RMS Z-score | 0.898 | 0.589 |
Model quality | ||
Ramachandran plot normality | -2.065 30 | -1.625 39 |
Rotamer normality | -1.689 57 | -1.201 68 |
Coarse packing | N/A N/A | N/A N/A |
Fine packing | N/A N/A | N/A N/A |
Bump severity | 0.000 95 | 0.000 95 |
Hydrogen bond satisfaction | N/A N/A | N/A N/A |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 79 |
Side chains flipped | 0 |
Waters removed | 756 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 19 |
Residues fitting density worse | 18 |