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The Co-bound dimeric structure of K79H/G80A/H81A myoglobin |
This entry was created with PDB-REDO version 8.04. |
From original header | |||||||
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Spacegroup | P 21 21 21 | a: 56.966 Å | b: 63.463 Å | c: 83.003 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
Resolution | 2.35 Å | Reflections | 13038 | Test set | 587 (4.5%) | ||
R | 0.2017 | R-free | 0.2688 | ||||
According to PDB-REDO | |||||||
Resolution | 2.35 Å | Reflections | 13038 | Test set | 587 (4.5%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.2030 | 0.2258 |
R-free | 0.2693 | 0.2480 |
Bond length RMS Z-score | 1.535 | 0.302 |
Bond angle RMS Z-score | 1.080 | 0.474 |
Model quality | ||
Ramachandran plot normality | -3.729 11 | -0.580 65 |
Rotamer normality | -3.431 33 | -1.676 64 |
Coarse packing | 2.724 100 | 2.862 100 |
Fine packing | 0.502 90 | 0.876 94 |
Bump severity | 0.027 32 | 0.009 61 |
Hydrogen bond satisfaction | 0.922 79 | 0.922 79 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 3 |
Side chains flipped | 0 |
Waters removed | 4 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 0 |
Residues fitting density worse | 0 |