Saimiri boliviensis boliviensis galectin-13 with lactose |
This entry was created with PDB-REDO version 8.06. |
From original header | |||||||
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Spacegroup | P 1 21 1 | a: 33.529 Å | b: 58.789 Å | c: 58.789 Å | α: 90.00° | β: 113.63° | γ: 90.00° |
Resolution | 1.71 Å | Reflections | 15693 | Test set | 1560 (9.9%) | ||
R | 0.1739 | R-free | 0.2095 | ||||
According to PDB-REDO | |||||||
Resolution | 1.71 Å | Reflections | 15693 | Test set | 1560 (9.9%) | ||
Twin | false | Radiation damage | 56 | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
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Crystallographic refinement | ||
R | 0.1885 | 0.1821 |
R-free | 0.2228 | 0.2190 |
Bond length RMS Z-score | 0.737 | 0.268 |
Bond angle RMS Z-score | 0.746 | 0.537 |
Model quality | ||
Ramachandran plot normality | 0.388 89 | 0.352 88 |
Rotamer normality | -1.063 71 | 0.012 90 |
Coarse packing | 0.402 67 | 0.403 67 |
Fine packing | -0.437 73 | -0.257 77 |
Bump severity | 0.002 85 | 0.001 90 |
Hydrogen bond satisfaction | 0.934 90 | 0.946 96 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 3 |
Side chains flipped | 0 |
Waters removed | 13 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 0 |
Residues fitting density worse | 0 |