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Crystal structure of exo-beta-1,3-galactanase from Phanerochaete chrysosporium Pc1,3Gal43A with galactose |
This entry was created with PDB-REDO version 7.33. |
From original header | |||||||
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Spacegroup | P 21 21 21 | a: 50.818 Å | b: 66.565 Å | c: 106.390 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
Resolution | 1.50 Å | Reflections | 57122 | Test set | 2885 (5.1%) | ||
R | 0.1340 | R-free | 0.1600 | ||||
According to PDB-REDO | |||||||
Resolution | 1.50 Å | Reflections | 57122 | Test set | 2885 (5.1%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1253 | 0.1214 |
R-free | 0.1447 | 0.1470 |
Bond length RMS Z-score | 0.285 | 0.721 |
Bond angle RMS Z-score | 0.639 | 0.876 |
Model quality | ||
Ramachandran plot normality | -0.714 61 | -0.803 59 |
Rotamer normality | -0.337 88 | 0.087 93 |
Coarse packing | 0.370 78 | 0.279 75 |
Fine packing | -1.596 28 | -1.571 29 |
Bump severity | 0.348 3 | 0.342 3 |
Hydrogen bond satisfaction | 0.896 45 | 0.899 49 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 7 |
Side chains flipped | 0 |
Waters removed | 27 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 0 |
Residues fitting density worse | 0 |