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Crystal Structure of subtype-switched Epithelial Adhesin 1 to 9 A domain (Epa1-CBL2Epa9) from Candida glabrata in complex with beta-lactose |
This entry was created with PDB-REDO version 7.33. |
From original header | |||||||
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Spacegroup | C 2 2 21 | a: 74.220 Å | b: 104.140 Å | c: 69.090 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
Resolution | 1.10 Å | Reflections | 107323 | Test set | 3762 (3.5%) | ||
R | 0.1460 | R-free | 0.1670 | ||||
According to PDB-REDO | |||||||
Resolution | 1.10 Å | Reflections | 107323 | Test set | 3762 (3.5%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1515 | 0.1392 |
R-free | 0.1718 | 0.1638 |
Bond length RMS Z-score | 0.421 | 0.818 |
Bond angle RMS Z-score | 0.754 | 0.945 |
Model quality | ||
Ramachandran plot normality | -0.751 60 | -0.878 57 |
Rotamer normality | -0.802 81 | -0.937 78 |
Coarse packing | -1.169 12 | -1.179 11 |
Fine packing | -2.065 13 | -2.020 14 |
Bump severity | 0.002 87 | 0.003 82 |
Hydrogen bond satisfaction | 0.858 16 | 0.861 17 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 1 |
Side chains flipped | 0 |
Waters removed | 65 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 43 |
Residues fitting density worse | 0 |