This entry is not up to date with the most recent version of PDB-REDO.
Please log in
to request an update.
Crystal Structure of subtype-switched Epithelial Adhesin 9 to 1 A domain (Epa9-CBL2Epa1) from Candida glabrata in complex with beta-lactose |
This entry was created with PDB-REDO version 7.33. |
From original header | |||||||
---|---|---|---|---|---|---|---|
Spacegroup | P 31 2 1 | a: 65.289 Å | b: 65.289 Å | c: 121.877 Å | α: 90.00° | β: 90.00° | γ: 120.00° |
Resolution | 2.80 Å | Reflections | 7789 | Test set | 0 (0.0%) | ||
R | 0.2040 | R-free | 0.2480 | ||||
According to PDB-REDO | |||||||
Resolution | 2.80 Å | Reflections | 7789 | Test set | 686 (8.8%) New test set, PDB-REDO compensated for this | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||||
Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.2314 | 0.2243 |
R-free | 0.2799 R-free was considered biased, the estimated unbiased R-free was used | 0.2816 |
Bond length RMS Z-score | 0.257 | 0.458 |
Bond angle RMS Z-score | 0.661 | 0.749 |
Model quality | ||
Ramachandran plot normality | -1.350 44 | -3.494 12 |
Rotamer normality | -2.052 57 | -4.149 24 |
Coarse packing | -1.576 6 | -1.790 4 |
Fine packing | -2.367 7 | -2.080 12 |
Bump severity | 0.029 30 | 0.049 19 |
Hydrogen bond satisfaction | 0.809 6 | 0.790 4 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 4 |
Side chains flipped | 6 |
Waters removed | 0 |
Peptides flipped | 5 |
Chiralities fixed | 0 |
Residues fitting density better | 7 |
Residues fitting density worse | 2 |