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Crystal Structure of the Carbohydrate Recognition Domain of the Human Macrophage Galactose C-Type Lectin Bound to the Tumor-Associated Tn Antigen |
This entry was created with PDB-REDO version 7.34. |
From original header | |||||||
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Spacegroup | P 31 2 1 | a: 52.155 Å | b: 52.155 Å | c: 112.667 Å | α: 90.00° | β: 90.00° | γ: 120.00° |
Resolution | 2.00 Å | Reflections | 12751 | Test set | 633 (5.0%) | ||
R | 0.1680 | R-free | 0.1960 | ||||
According to PDB-REDO | |||||||
Resolution | 1.98 Å | Reflections | 12751 | Test set | 633 (5.0%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1681 | 0.1718 |
R-free | 0.1956 | 0.1947 |
Bond length RMS Z-score | 0.752 | 0.479 |
Bond angle RMS Z-score | 1.035 | 0.712 |
Model quality | ||
Ramachandran plot normality | 0.071 82 | 0.522 89 |
Rotamer normality | -1.191 74 | -0.191 90 |
Coarse packing | -0.802 23 | -0.782 24 |
Fine packing | -1.805 20 | -1.847 19 |
Bump severity | 0.253 4 | 0.242 4 |
Hydrogen bond satisfaction | 0.823 8 | 0.824 8 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 2 |
Side chains flipped | 0 |
Waters removed | 0 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 1 |
Residues fitting density worse | 0 |