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Crystal structure of 438-B11 Fab in complex with an uncleaved prefusion optimized (UFO) soluble BG505 trimer and Fab 35O22 at 3.80 Angstrom |
This entry was created with PDB-REDO version 8.04. |
From original header | |||||||
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Spacegroup | H 3 2 | a: 247.308 Å | b: 247.308 Å | c: 257.612 Å | α: 90.00° | β: 90.00° | γ: 120.00° |
Resolution | 3.80 Å | Reflections | 29787 | Test set | 1491 (5.0%) | ||
R | 0.2990 | R-free | 0.3173 | ||||
According to PDB-REDO | |||||||
Resolution | 3.80 Å | Reflections | 29787 | Test set | 1491 (5.0%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.3091 | 0.3156 |
R-free | 0.3221 | 0.3550 |
Bond length RMS Z-score | 0.473 | 0.363 |
Bond angle RMS Z-score | 0.641 | 0.558 |
Model quality | ||
Ramachandran plot normality | -3.718 11 | -3.931 10 |
Rotamer normality | -0.231 89 | -1.870 60 |
Coarse packing | -1.707 4 | -1.650 5 |
Fine packing | -2.878 3 | -2.801 3 |
Bump severity | 1.000 0 | 0.379 2 |
Hydrogen bond satisfaction | 0.736 2 | 0.754 2 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 16 |
Side chains flipped | 0 |
Waters removed | 0 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 35 |
Residues fitting density worse | 3 |