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The crystal structure of Glycoside Hydrolase BglX inactive mutant D286N from P. aeruginosa in complex with glucose |
This entry was created with PDB-REDO version 8.04. |
From original header | |||||||
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Spacegroup | P 1 | a: 70.713 Å | b: 73.624 Å | c: 81.509 Å | α: 65.38° | β: 73.41° | γ: 69.89° |
Resolution | 2.85 Å | Reflections | 31258 | Test set | 1541 (4.9%) | ||
R | 0.1730 | R-free | 0.2228 | ||||
According to PDB-REDO | |||||||
Resolution | 2.85 Å | Reflections | 31258 | Test set | 1541 (4.9%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1738 | 0.1897 |
R-free | 0.2234 | 0.2304 |
Bond length RMS Z-score | 1.373 | 0.224 |
Bond angle RMS Z-score | 0.932 | 0.446 |
Model quality | ||
Ramachandran plot normality | -2.486 23 | -1.610 39 |
Rotamer normality | -2.430 42 | -1.038 71 |
Coarse packing | N/A N/A | N/A N/A |
Fine packing | N/A N/A | N/A N/A |
Bump severity | 0.000 95 | 0.000 95 |
Hydrogen bond satisfaction | N/A N/A | N/A N/A |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 30 |
Side chains flipped | 0 |
Waters removed | 50 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 0 |
Residues fitting density worse | 0 |