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SBP RafE in complex with stachyose |
This entry was created with PDB-REDO version 7.32. |
From original header | |||||||
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Spacegroup | P 21 21 21 | a: 49.278 Å | b: 118.839 Å | c: 146.012 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
Resolution | 2.35 Å | Reflections | 36229 | Test set | 1850 (5.1%) | ||
R | 0.2230 | R-free | 0.2470 | ||||
According to PDB-REDO | |||||||
Resolution | 2.35 Å | Reflections | 36229 | Test set | 1850 (5.1%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.2210 | 0.1857 |
R-free | 0.2423 | 0.2258 |
Bond length RMS Z-score | 0.294 | 0.436 |
Bond angle RMS Z-score | 0.613 | 0.623 |
Model quality | ||
Ramachandran plot normality | -2.153 27 | -0.361 71 |
Rotamer normality | -1.002 77 | -0.870 80 |
Coarse packing | -0.481 37 | -0.229 50 |
Fine packing | -0.256 77 | 0.311 88 |
Bump severity | 0.053 18 | 0.056 17 |
Hydrogen bond satisfaction | 0.895 44 | 0.906 58 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 11 |
Side chains flipped | 33 |
Waters removed | 5 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 3 |
Residues fitting density worse | 0 |