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Structure of Lassa virus glycoprotein in complex with Fab 25.6A |
This entry was created with PDB-REDO version 8.04. |
From original header | |||||||
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Spacegroup | P 61 2 2 | a: 152.242 Å | b: 152.242 Å | c: 453.889 Å | α: 90.00° | β: 90.00° | γ: 120.00° |
Resolution | 3.50 Å | Reflections | 40184 | Test set | 2000 (5.0%) | ||
R | 0.2050 | R-free | 0.2472 | ||||
According to PDB-REDO | |||||||
Resolution | 3.50 Å | Reflections | 40184 | Test set | 2000 (5.0%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.2139 | 0.2065 |
R-free | 0.2554 | 0.2488 |
Bond length RMS Z-score | 0.431 | 0.642 |
Bond angle RMS Z-score | 0.593 | 0.780 |
Model quality | ||
Ramachandran plot normality | -2.134 27 | -3.401 13 |
Rotamer normality | -3.796 28 | -4.203 23 |
Coarse packing | -0.106 56 | -0.043 60 |
Fine packing | -1.781 21 | -1.555 29 |
Bump severity | 0.850 0 | 0.305 3 |
Hydrogen bond satisfaction | 0.813 6 | 0.830 9 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 9 |
Side chains flipped | 0 |
Waters removed | 0 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 24 |
Residues fitting density worse | 0 |