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Salmonella typhi PltB Homopentamer T65I Mutant with Neu5Ac-alpha-2-3-Gal-beta-1-4-GlcNAc Glycans |
This entry was created with PDB-REDO version 7.32. |
From original header | |||||||
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Spacegroup | P 21 21 21 | a: 61.282 Å | b: 97.714 Å | c: 119.076 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
Resolution | 2.17 Å | Reflections | 38243 | Test set | 1581 (4.1%) | ||
R | 0.1860 | R-free | 0.2270 | ||||
According to PDB-REDO | |||||||
Resolution | 2.17 Å | Reflections | 38243 | Test set | 1581 (4.1%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1931 | 0.1892 |
R-free | 0.2325 | 0.2121 |
Bond length RMS Z-score | 0.362 | 0.602 |
Bond angle RMS Z-score | 0.663 | 0.778 |
Model quality | ||
Ramachandran plot normality | -1.260 46 | -0.198 76 |
Rotamer normality | -1.533 67 | -0.397 87 |
Coarse packing | 0.765 90 | 0.776 90 |
Fine packing | -1.398 36 | -1.365 37 |
Bump severity | 0.006 70 | 0.002 87 |
Hydrogen bond satisfaction | 0.898 48 | 0.911 65 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 10 |
Side chains flipped | 0 |
Waters removed | 0 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 0 |
Residues fitting density worse | 0 |