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Crystal structure of SpGH29 |
This entry was created with PDB-REDO version 8.03. |
From original header | |||||||
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Spacegroup | P 1 21 1 | a: 69.828 Å | b: 98.429 Å | c: 79.519 Å | α: 90.00° | β: 97.26° | γ: 90.00° |
Resolution | 1.62 Å | Reflections | 131461 | Test set | 6557 (5.0%) | ||
R | 0.1698 | R-free | 0.2049 | ||||
According to PDB-REDO | |||||||
Resolution | 1.62 Å | Reflections | 131461 | Test set | 6557 (5.0%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
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Crystallographic refinement | ||
R | 0.1642 | 0.1465 |
R-free | 0.1979 | 0.1737 |
Bond length RMS Z-score | 0.546 | 0.574 |
Bond angle RMS Z-score | 0.815 | 0.703 |
Model quality | ||
Ramachandran plot normality | -0.605 65 | -0.184 76 |
Rotamer normality | -0.938 78 | 0.056 93 |
Coarse packing | 0.742 89 | 0.704 88 |
Fine packing | -1.755 22 | -1.713 23 |
Bump severity | 0.001 92 | 0.001 92 |
Hydrogen bond satisfaction | 0.903 54 | 0.903 54 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 8 |
Side chains flipped | 5 |
Waters removed | 12 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 31 |
Residues fitting density worse | 0 |